Structure of PDB 1ord Chain A

Receptor sequence
>1ordA (length=730) Species: 1593 (Lactobacillus sp. 30A) [Search protein sequence]
SSSLKIASTQEARQYFDTDRVVVDAVGSDFTDVGAVIAMDYETDVIDAAD
ATKFGIPVFAVTKDAQAISADELKKIFHIIDLENKFDATVNAREIETAVN
NYEDSILPPFFKSLKEYVSRGLIQFDCPGHQGGQYYRKHPAGREFYDFFG
ETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSN
ANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGF
IGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAH
EVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVV
QSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYP
MYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVV
NGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT
PGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPA
KMNNLITQLLQLQRLIEEDAPLKQVLPSIYAANEERYNGYTIRELCQELH
DFYKNNNTFTYQKRLFLREFFPEQGMLPYEARQEFIRNHNKLVPLNKIEG
EIALEGALPYPPGVFCVAPGEKWSETAVKYFTILQDGINNFPGFAPEIQG
VYFKQEGDKVVAYGEVYDAEVAKNDDRYNN
3D structure
PDB1ord Crystallographic structure of a PLP-dependent ornithine decarboxylase from Lactobacillus 30a to 3.0 A resolution.
ChainA
Resolution3.0 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H223 D316 K355
Catalytic site (residue number reindexed from 1) H223 D316 K355
Enzyme Commision number 4.1.1.17: ornithine decarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP A G197 S198 S199 H223 D316 A318 W319 S352 H354 K355 G197 S198 S199 H223 D316 A318 W319 S352 H354 K355
BS02 PLP A T395 S396 T395 S396
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004586 ornithine decarboxylase activity
GO:0016831 carboxy-lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0006520 amino acid metabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1ord, PDBe:1ord, PDBj:1ord
PDBsum1ord
PubMed7563080
UniProtP43099|DCOR_LACS3 Inducible ornithine decarboxylase (Gene Name=odcI)

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