Structure of PDB 1ofm Chain A

Receptor sequence
>1ofmA (length=481) Species: 984 (Pedobacter heparinus) [Search protein sequence]
EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKA
LNPGKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGPGLVAIYG
SYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQ
VINLNNTARAIKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRN
DIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDH
QVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYL
NPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKF
ETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPV
NISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWL
KEMPGTYALTARLSADRAAKFKAVIKRNKEH
3D structure
PDB1ofm The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-Dependent Catalytic Machinery
ChainA
Resolution1.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.2.2.19: chondroitin B lyase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MAN A H202 D233 S234 H177 D208 S209
BS02 ASG A E245 R271 H334 R363 R364 E220 R246 H309 R338 R339
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0033999 chondroitin B lyase activity

View graph for
Molecular Function
External links
PDB RCSB:1ofm, PDBe:1ofm, PDBj:1ofm
PDBsum1ofm
PubMed15155751
UniProtQ46079|CSLB_PEDHD Chondroitinase-B (Gene Name=cslB)

[Back to BioLiP]