Structure of PDB 1nov Chain A

Receptor sequence
>1novA (length=309) Species: 12288 (Nodamura virus) [Search protein sequence]
NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSIT
FTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTS
ATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQT
VATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFE
FHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTP
TGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDI
PIAVACKDN
3D structure
PDB1nov Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals.
ChainA
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A K68 F71 A72 D75 F76 Q242 Y342 K349 I354 V358 D362 N363 K14 F17 A18 D21 F22 Q191 Y288 K295 I300 V304 D308 N309
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nov, PDBe:1nov, PDBj:1nov
PDBsum1nov
PubMed15299863
UniProtP12871|CAPSD_NODAM Capsid protein alpha (Gene Name=alpha)

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