Structure of PDB 1nkk Chain A

Receptor sequence
>1nkkA (length=222) Species: 10359 (Human betaherpesvirus 5) [Search protein sequence]
DEQQSQAVAPVYVGGFLARYDQSPDEARLLLPRDVVEHWLHAQVALPLNI
NHDDTAVVGHVAAMQSVRDGLFCLGCVTSPRFLEIVRRASEKSELVSRGP
VSPLQPDKVVEFLSGSYAGLSLSSRRTTPFKHVALCSVGRRRGTLAVYGR
DPEWVTQRFPDLTAADRDGLRAQWQRGDPFRSDSYGLLGNSVDALYIRER
LPKLRYDKQLVGVTERESYVKA
3D structure
PDB1nkk Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
ChainA
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.21.97: assemblin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A H63 S132 L133 S134 S135 R136 R137 G164 H52 S121 L122 S123 S124 R125 R126 G139
BS02 peptide A H63 S132 R165 H52 S121 R140
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nkk, PDBe:1nkk, PDBj:1nkk
PDBsum1nkk
PubMed12549906
UniProtP16753|SCAF_HCMVA Capsid scaffolding protein (Gene Name=UL80)

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