Structure of PDB 1k8d Chain A

Receptor sequence
>1k8dA (length=274) Species: 10090 (Mus musculus) [Search protein sequence]
GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRAR
WMEQEGPEYWERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYG
CDMGSDGRLLRGYLQFAYEGRDYIALNEDLKTWTAVDMAAQITRRKWEQA
GIAEKDQAYLEGTCMQSLRRYLELGKETLLRTDPPKAHVTHHPRSYGAVT
LRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVP
LGKEQNYTCHVNHEGLPEPLTLRW
3D structure
PDB1k8d Promiscuous antigen presentation by the nonclassical MHC Ib Qa-2 is enabled by a shallow, hydrophobic groove and self-stabilized peptide conformation.
ChainA
Resolution2.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 E63 A67 H70 T80 Y84 W97 Y99 F116 Y123 T143 K146 W147 I152 K155 D156 Y159 S167 Y171 Y7 E63 A67 H70 T80 Y84 W97 Y99 F116 Y123 T143 K146 W147 I152 K155 D156 Y159 S167 Y171
External links
PDB RCSB:1k8d, PDBe:1k8d, PDBj:1k8d
PDBsum1k8d
PubMed11738047
UniProtP14429|HA17_MOUSE H-2 class I histocompatibility antigen, Q7 alpha chain (Gene Name=H2-Q7)

[Back to BioLiP]