Structure of PDB 1gdt Chain A

Receptor sequence
>1gdtA (length=183) Species: 562 (Escherichia coli) [Search protein sequence]
MRLFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDL
LRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTD
GEMGKMVVTILSAVAQAERQRILERTNEGRQEAMAKGVVFGRKRKIDRDA
VLNMWQQGLGASHISKTMNIARSTVYKVINESN
3D structure
PDB1gdt Crystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site.
ChainA
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A R125 T126 G129 R130 G141 R142 G160 S162 R172 Y176 R125 T126 G129 R130 G141 R142 G160 S162 R172 Y176
BS02 dna A R119 L123 R130 R119 L123 R130
BS03 dna A F140 G141 R142 R144 K145 I146 R148 A171 S173 T174 K177 F140 G141 R142 R144 K145 I146 R148 A171 S173 T174 K177
Gene Ontology
Molecular Function
GO:0000150 DNA strand exchange activity
GO:0003677 DNA binding
Biological Process
GO:0006310 DNA recombination
GO:0015074 DNA integration

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Molecular Function
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Biological Process
External links
PDB RCSB:1gdt, PDBe:1gdt, PDBj:1gdt
PDBsum1gdt
PubMed7628011
UniProtP03012|TNR1_ECOLI Transposon gamma-delta resolvase (Gene Name=tnpR)

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