Structure of PDB 1esk Chain A

Receptor sequence
>1eskA (length=42) Species: 11706 (HIV-1 M:B_HXB2R) [Search protein sequence]
NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ
3D structure
PDB1esk Structure of the Complex Between the HIV-1 Nucleocapsid Protein and the Single-stranded Pentanucleotide d(ACGCC).
ChainA
ResolutionN/A
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
3.4.23.16: HIV-1 retropepsin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C15 C18 H23 C28 C4 C7 H12 C17
BS02 ZN A C36 C39 H44 C49 C25 C28 H33 C38
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:1esk, PDBe:1esk, PDBj:1esk
PDBsum1esk
PubMed
UniProtP04585|POL_HV1H2 Gag-Pol polyprotein (Gene Name=gag-pol)

[Back to BioLiP]