Structure of PDB 1ddl Chain A

Receptor sequence
>1ddlA (length=188) Species: 70821 (Desmodium yellow mottle virus) [Search protein sequence]
MEQDKILAHQASLNTKPSLLPPPVGNPPPVISYPFQITLASLGTEDAADS
VSIASNSVLATYTALYRHAQLKHLKATIHPTYMAPKYPTSVALVWVPANS
TATSTQVLDTYGGLHFCIGGSVNSVKPIDVEANLTNLNPIIKASTTFTDT
PKLLYYSKAQATAPTSPTCYLTIQGQIELSSPLLQASS
3D structure
PDB1ddl Refined structure of desmodium yellow mottle tymovirus at 2.7 A resolution.
ChainA
Resolution2.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A G25 N26 G25 N26
BS02 rna A L93 V94 W95 V107 T110 Y111 G112 G113 L114 V130 E131 N133 N136 L93 V94 W95 V107 T110 Y111 G112 G113 L114 V130 E131 N133 N136
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid
GO:0044423 virion component

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:1ddl, PDBe:1ddl, PDBj:1ddl
PDBsum1ddl
PubMed10966774
UniProtO89511

[Back to BioLiP]