Structure of PDB 1d5a Chain A

Receptor sequence
>1d5aA (length=733) Species: 108142 (Desulfurococcus sp. Tok) [Search protein sequence]
MILDADYITEDGKPVIRVFKKEKGEFKIDYDRDFEPYIYALLKDDSAIED
IKKITAERHGTTVRVTRAERVKKKFLGRPVEVWKLYFTHPQDVPAIRDKI
REHPAVVDIYEYDIPFAKRYLIDRGLIPMEGDEELRMLAFDIETLAHAGA
AAGAGPILMISYADEEGARVITWKNIDLPYVESVSTEKEMIKRFLKVIQE
KDPDVLITYNGDNFDFAYLKKRSEMLGVKFILGRDGSEPKIQRMGDRFAV
EVKGRIHFDLYPVIRRTINLPTYTLETVYEPVFGQPAEKVYAEEIAEAWA
SGEGLERVARYSMEDAKATYELGKEFFPMEAQLSRLVGQSLWDVSRSSTG
NLVEWFLLRKAYERNDVAPNKPDERELARRTESYAGGYVKEPEKGLWENI
VYLDYKSLYPSIIITHNVSPDTLNREGCREYDVAPQVGHRFCKDFPGFIP
SLLGDLLEERQKVKKKMKATVDPIERKLLDYRQRAIKILANSYYGYYAYA
NARWYCRECAESVTAWGRQYIETTMREIEEKFGFKVLYADTDGFFATIPG
ADAETVKNKAKEFLNYINPRLPGLLELEYEGFYRRGFFVTKKKYAVIDEE
DKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKL
SRHEVPPEKLVIYEAGPHVAAAATVISYIVLKGPGRVGDRAIPFDEFDPA
KHRYDAEYYIENQVLPAVERILRAFGYRKEDLR
3D structure
PDB1d5a Crystal structure of an archaebacterial DNA polymerase.
ChainA
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A D141 D315 D141 D315
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0071897 DNA biosynthetic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1d5a, PDBe:1d5a, PDBj:1d5a
PDBsum1d5a
PubMed10545321
UniProtQ7SIG7|DPOL_DESST DNA polymerase (Gene Name=pol)

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