Structure of PDB 1amo Chain A

Receptor sequence

>1amoA (length=601) Species: 10116 (Rattus norvegicus) [Search protein sequence]

VKESSFVEKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSAD
PEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQETDVDL
TGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDGNLE
EDFITWREQFWPAVCEFFGVEARQYELVVHEDMDVAKVYTGEMGRLKSYE
NQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDISDSKIRYESGDHV
AVYPANDSALVNQIGEILGADLDVIMSLNNLDEESNKKHPFPCPTTYRTA
LTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV
VEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVH
ICAVAVEYEAKSGRVNKGVATSWLRAKEPALVPMFVRKSQFRLPFKSTTP
VIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE
ELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHI
YVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW
S

3D structure

PDB

1amo Three-dimensional structure of NADPH-cytochrome P450 reductase: prototype for FMN- and FAD-containing enzymes.

Chain

Resolution

2.6 Å

3D
structure

Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Catalytic site (original residue number in PDB)	Y456 S457 C630 D675 W677
Catalytic site (residue number reindexed from 1)	Y386 S387 C553 D598 W600
Enzyme Commision number	1.6.2.4: NADPH--hemoprotein reductase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	FAD	A	H319 R424 R454 Y455 Y456 S457 C472 A473 Y478 G488 V489 A490 T491 W677	H249 R354 R384 Y385 Y386 S387 C402 A403 Y408 G418 V419 A420 T421 W600
BS02	FMN	A	S86 Q87 T88 T90 A91 T139 Y140 G141 L173 G174 N175 Y178 H180 F181	S23 Q24 T25 T27 A28 T76 Y77 G78 L110 G111 N112 Y115 H117 F118
BS03	NAP	A	R298 G534 T535 C566 S596 R597 K602 Y604 Q606 M636	R228 G457 T458 C489 S519 R520 K525 Y527 Q529 M559

Gene Ontology

	Molecular Function
GO:0003958	NADPH-hemoprotein reductase activity
GO:0004128	cytochrome-b5 reductase activity, acting on NAD(P)H
GO:0008941	nitric oxide dioxygenase NAD(P)H activity
GO:0009055	electron transfer activity
GO:0010181	FMN binding
GO:0016491	oxidoreductase activity
GO:0016787	hydrolase activity
GO:0019899	enzyme binding
GO:0047726	iron-cytochrome-c reductase activity
GO:0050660	flavin adenine dinucleotide binding
GO:0050661	NADP binding

	Biological Process
GO:0003420	regulation of growth plate cartilage chondrocyte proliferation
GO:0007584	response to nutrient
GO:0009410	response to xenobiotic stimulus
GO:0009437	carnitine metabolic process
GO:0009725	response to hormone
GO:0009812	flavonoid metabolic process
GO:0019395	fatty acid oxidation
GO:0022900	electron transport chain
GO:0032332	positive regulation of chondrocyte differentiation
GO:0043066	negative regulation of apoptotic process
GO:0043602	nitrate catabolic process
GO:0045542	positive regulation of cholesterol biosynthetic process
GO:0045880	positive regulation of smoothened signaling pathway
GO:0046210	nitric oxide catabolic process
GO:0070988	demethylation
GO:0071371	cellular response to gonadotropin stimulus
GO:0071372	cellular response to follicle-stimulating hormone stimulus
GO:0071375	cellular response to peptide hormone stimulus
GO:0071548	response to dexamethasone
GO:0090031	positive regulation of steroid hormone biosynthetic process
GO:0090181	regulation of cholesterol metabolic process
GO:0090346	cellular organofluorine metabolic process

	Cellular Component
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005789	endoplasmic reticulum membrane
GO:0005829	cytosol
GO:0016020	membrane
GO:0043231	intracellular membrane-bounded organelle

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:1amo, PDBe:1amo, PDBj:1amo
PDBsum	1amo
PubMed	9237990
UniProt	P00388\|NCPR_RAT NADPH--cytochrome P450 reductase (Gene Name=Por)

[Back to BioLiP]