Structure of PDB 1aaf Chain A

Receptor sequence
>1aafA (length=55) Species: 11696 (HIV-1 M:B_MN) [Search protein sequence]
MQRGNFRNQRKIIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCT
ERQAN
3D structure
PDB1aaf Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution-state structure of the nucleocapsid protein from HIV-1.
ChainA
ResolutionN/A
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
3.4.23.16: HIV-1 retropepsin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C15 C18 H23 C28 C15 C18 H23 C28
BS02 ZN A C36 C39 H44 C49 C36 C39 H44 C49
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:1aaf, PDBe:1aaf, PDBj:1aaf
PDBsum1aaf
PubMed1304355
UniProtP05961|POL_HV1MN Gag-Pol polyprotein (Gene Name=gag-pol)

[Back to BioLiP]