Structure of PDB 7y7b Chain 9

Receptor sequence
>7y7b9 (length=180) Species: 173977 (Chroomonas placoidea) [Search protein sequence]
LYKEGSLQGKGVNCIPIFKRPDSLKGDAVGDMGFDPFGFSSWVDMNYVRE
AEIKHGRIAMLAFAGIVVEVLGIKAPGAGKILGSSTDIFEIHNAAVEKGS
MGQILLWCGFFEMTAGLPAMQQMLEGSGRTPGDFGFDPLGLGKKDFAQMQ
IKEIQNGRLAMLAVSGMVHHALINGKVQGL
3D structure
PDB7y7b Structural basis and evolution of the photosystem I-light-harvesting supercomplex of cryptophyte algae.
Chain9
Resolution2.66 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA 9 C53 P55 C14 P16
BS02 CLA 9 G69 D70 M71 F73 M84 V87 R88 A90 E91 H94 R197 M200 L201 G30 D31 M32 F34 M45 V48 R49 A51 E52 H55 R158 M161 L162
BS03 CLA 9 Y86 H94 Y47 H55
BS04 CLA 9 L100 A101 V107 K113 L121 I130 M140 L61 A62 V68 K74 L82 I91 M101
BS05 CLA 9 S139 Q142 I143 W146 S100 Q103 I104 W107
BS06 CLA 9 H131 V135 M140 G141 I143 L144 H92 V96 M101 G102 I104 L105
BS07 CLA 9 Y86 A90 K93 H94 I97 G148 E151 M152 Y47 A51 K54 H55 I58 G109 E112 M113
BS08 CLA 9 R96 M99 L100 G171 D172 F173 G174 F175 L180 G181 F185 M188 Q189 E192 R57 M60 L61 G132 D133 F134 G135 F136 L141 G142 F146 M149 Q150 E153
BS09 CLA 9 Y41 L46 I190 K191 Q194 N195 Y2 L7 I151 K152 Q155 N156
BS10 KC2 9 F102 M188 K191 N195 F63 M149 K152 N156
BS11 CLA 9 L201 A202 G205 H209 I212 N213 G218 L162 A163 G166 H170 I173 N174 G179
BS12 CLA 9 H208 L211 I212 H169 L172 I173
BS13 CLA 9 A114 P115 G116 A117 I120 A75 P76 G77 A78 I81
BS14 CLA 9 V109 L110 Q217 V70 L71 Q178
BS15 II0 9 M99 F102 D176 L178 L198 A199 A202 M206 Q217 M60 F63 D137 L139 L159 A160 A163 M167 Q178
BS16 II0 9 F73 D74 P75 F76 F78 A101 E108 M200 F34 D35 P36 F37 F39 A62 E69 M161
BS17 II0 9 Q194 R197 L198 L201 Q155 R158 L159 L162
BS18 II0 9 I97 I143 C147 F150 I58 I104 C108 F111
BS19 IHT 9 F73 F128 H131 S204 V207 F34 F89 H92 S165 V168
BS20 CLA 9 F173 F175 F134 F136
BS21 II0 9 Q142 L145 W146 Q103 L106 W107
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 29 20:58:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7y7b', asym_id = '9', title = 'Structural basis and evolution of the photosyste...ght-harvesting supercomplex of cryptophyte algae.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7y7b', asym_id='9', title='Structural basis and evolution of the photosyste...ght-harvesting supercomplex of cryptophyte algae.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '7y7b', asym_id = '9'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='7y7b', asym_id='9')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>