Structure of PDB 7pak Chain 9

Receptor sequence
>7pak9 (length=393) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence]
AREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQID
KAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDG
AILVVSATDSVMPQTREHILLARQVGVPRMVVFLNKCDIATDEEVQELVA
EEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAKIHDLMNAVDEWIP
TPEREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVGQEIEIVGLRPI
RKAVVTGIEMFKKELDSAMAGDNAGVLLRGVDRKEVERGQVLAKPGSIKP
HKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSISLPENTEMV
LPGDNTSITVELIAPIACEKGSKFSIREGGRTVGAGSVTEVLE
3D structure
PDB7pak Visualizing translation dynamics at atomic detail inside a bacterial cell.
Chain9
Resolution5.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 9 T222 G223 R224 T257 R280 T221 G222 R223 T256 R279
BS02 rna 9 N64 Y88 K90 N91 T321 G322 F323 L324 G326 Y327 R328 Q330 D337 T339 I364 G380 G381 N63 Y87 K89 N90 T320 G321 F322 L323 G325 Y326 R327 Q329 D336 T338 I363 G379 G380
Gene Ontology
Molecular Function
GO:0001968 fibronectin binding
GO:0003746 translation elongation factor activity
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
Biological Process
GO:0006412 translation
GO:0006414 translational elongation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0009897 external side of plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pak, PDBe:7pak, PDBj:7pak
PDBsum7pak
PubMed36171285
UniProtP23568|EFTU_MYCPN Elongation factor Tu (Gene Name=tuf)

[Back to BioLiP]