Structure of PDB 8wcl Chain 8

Receptor sequence

>8wcl8 (length=169) Species: 240364 (Chaetoceros neogracilis)

EIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVH
NNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAW
MPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAE
VLTGQTMYEQYASGHISPF

3D structure

• PDB: 8wcl Structural and spectroscopic insights into fucoxanthin chlorophyll a/c-binding proteins of diatoms in diverse oligomeric states.
• Chain: 8
• Resolution: 2.65 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CLA	8	P40 N161 V162 N165	P9 N130 V131 N134
BS02	A86	8	L41 N165 A169 M172	L10 N134 A138 M141
BS03	A86	8	K66 Y90 L91 P93 I120 F124 E128	K35 Y59 L60 P62 I89 F93 E97
BS04	A86	8	Y44 P46 H67 V70 A74 H81 G105 I109 M171 M178	Y13 P15 H36 V39 A43 H50 G74 I78 M140 M147
BS05	A86	8	M72 G144 Y145 F146 N166 A169 G173 M188 Y192	M41 G113 Y114 F115 N135 A138 G142 M157 Y161
BS06	A86	8	M175 V182	M144 V151
BS07	A86	8	I79 N83 Y192	I48 N52 Y161
BS08	CLA	8	G36 Y44 W49 F57 R60 R61 E64 H67 R168 M172	G5 Y13 W18 F26 R29 R30 E33 H36 R137 M141
BS09	KC2	8	R59 V63 H67	R28 V32 H36
BS10	CLA	8	A74 G77 V80 H81 V86 F87 F99 I102 G108	A43 G46 V49 H50 V55 F56 F68 I71 G77
BS11	KC2	8	L91 S92 P93 S94 A115 G116 Q119 I120 F123	L60 S61 P62 S63 A84 G85 Q88 I89 F92
BS12	KC1	8	R59 V63 K66 H67 L121 A125 E128 L129 A134 Y137	R28 V32 K35 H36 L90 A94 E97 L98 A103 Y106
BS13	CLA	8	R69 M72 G139 D140 Y141 V143 G144 Y145 D149 K159 L160 E163 N166	R38 M41 G108 D109 Y110 V112 G113 Y114 D118 K128 L129 E132 N135
BS14	KC1	8	Y145 K159 V162 N166	Y114 K128 V131 N135
BS15	CLA	8	M172 G173 G176 V179 Q191 H196 I197 P199	M141 G142 G145 V148 Q160 H165 I166 P168
BS16	CLA	8	V106 I109 R110	V75 I78 R79
BS17	CLA	8	A130 W131 M132	A99 W100 M101
BS18	A86	8	F146 G147	F115 G116

External links

• PDB: RCSB:8wcl, PDBe:8wcl, PDBj:8wcl
• PDBsum: 8wcl
• PubMed: 39030906