Structure of PDB 6l4t Chain 8

Receptor sequence
>6l4t8 (length=213) [Search protein sequence]
MPERLWDSMVDKTERSKAVPFLPRAVNLDGSLPGDVGFDPFYLSSIPKDF
SGFIQPPQWEEKGIPTLYWMREAELKHCRVAMLAWFGWLATDGAFGVTLR
FPGEIYSVENIPTAYEAHNALVSQGSMGFLLLAVGFIEFCTGAVLVEVAK
GASDREAGDFKLDPLSFLKGKSEEEIKRMKTREIANGRLAMLAFGGVATQ
TALEGGNHAFPYF
3D structure
PDB6l4t Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom
Chain8
Resolution2.6 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA 8 G192 F193 F196 G135 F136 F139
BS02 CLA 8 F193 K218 F136 K161
BS03 KC1 8 F158 P159 F101 P102
BS04 A86 8 G185 F186 L189 G128 F129 L132
BS05 CLA 8 L89 G91 D92 V93 F95 D96 L100 M127 R128 E131 H134 R245 M248 L249 L32 G34 D35 V36 F38 D39 L43 M70 R71 E74 H77 R188 M191 L192
BS06 CLA 8 F107 F110 W126 M127 A130 H134 F50 F53 W69 M70 A73 H77
BS07 CLA 8 L140 A141 F143 G144 T148 L156 R157 F158 Y163 L178 S183 M184 L187 I194 L83 A84 F86 G87 T91 L99 R100 F101 Y106 L121 S126 M127 L130 I137
BS08 CLA 8 F110 W126 E129 A130 K133 H134 L188 V191 G192 E195 F196 F53 W69 E72 A73 K76 H77 L131 V134 G135 E138 F139
BS09 CLA 8 R136 M139 L140 F143 G215 F217 L219 D220 F224 M236 K237 E240 N243 R79 M82 L83 F86 G158 F160 L162 D163 F167 M179 K180 E183 N186
BS10 KC1 8 R235 T238 R239 A242 N243 L246 R178 T181 R182 A185 N186 L189
BS11 KC1 8 W142 R239 N243 W85 R182 N186
BS12 CLA 8 L249 A250 G253 T256 Q257 F270 L192 A193 G196 T199 Q200 F213
BS13 CLA 8 A75 P77 V93 F95 A18 P20 V36 F38
BS14 KC1 8 H175 V179 M184 L187 L188 H118 V122 M127 L130 L131
BS15 KC1 8 T256 A259 T199 A202
BS16 KC1 8 R61 L62 R4 L5
BS17 KC1 8 I111 Q112 P113 W116 F196 V203 I54 Q55 P56 W59 F139 V146
BS18 KC1 8 R61 W63 M66 F98 L100 I103 R4 W6 M9 F41 L43 I46
BS19 A86 8 M139 W142 F143 P221 L246 A247 A250 Q257 P268 Y269 M82 W85 F86 P164 L189 A190 A193 Q200 P211 Y212
BS20 DD6 8 F95 D96 P97 F98 V137 A138 A141 A171 M248 L249 F251 F38 D39 P40 F41 V80 A81 A84 A114 M191 L192 F194
BS21 DD6 8 K133 R136 V137 F158 V191 K76 R79 V80 F101 V134
BS22 A86 8 Y172 H175 N176 G252 A255 Y115 H118 N119 G195 A198
BS23 A86 8 A242 R245 L249 A185 R188 L192
BS24 A86 8 F98 G109 F110 F41 G52 F53
BS25 A86 8 F143 F152 F86 F95
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Tue Dec 3 00:51:44 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6l4t', asym_id = '8', title = 'Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6l4t', asym_id='8', title='Structure of photosystem I-light-harvesting supercomplex from a red-lineage diatom')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '6l4t', asym_id = '8'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='6l4t', asym_id='8')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>