Structure of PDB 5nwy Chain 8

Receptor sequence

>5nwy8 (length=127) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

NQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLE
LVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGF
VTRDARQVERKKVGLRKARRRPQFSKR

3D structure

PDB

5nwy The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.

Chain

Resolution

2.9 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	8	K129 R130	K126 R127
BS02	rna	8	Y7 T9 R11 R12 K13 S14 A16 R18 F20 Y38 R41 E42 Y64 G69 G70 G71 I72 S73 Q75 R85 R95 R99 V104 T105 R106 A108 R109 Q110 V111 E112 R113 K114 K115 V116 G117 K120 R122 R123 R124 Q126 F127 S128 R130	Y4 T6 R8 R9 K10 S11 A13 R15 F17 Y35 R38 E39 Y61 G66 G67 G68 I69 S70 Q72 R82 R92 R96 V101 T102 R103 A105 R106 Q107 V108 E109 R110 K111 K112 V113 G114 K117 R119 R120 R121 Q123 F124 S125 R127

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:5nwy, PDBe:5nwy, PDBj:5nwy
PDBsum	5nwy
PubMed	28556777
UniProt	P0A7X3\|RS9_ECOLI Small ribosomal subunit protein uS9 (Gene Name=rpsI)