Structure of PDB 6zvk Chain 72

Receptor sequence

>6zvk72 (length=159) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

TNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKG
MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKS
RDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELL
EPIPYEFMA

3D structure

PDB

6zvk The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.

Chain

Resolution

3.49 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	72	T2 N3 K5 G6 K7 R8 R9 R12 Y13 M14 S16 F19 H22 D41 K43 G46 T47 Q49 K50 G51 H54 H58 K60 T61 T68 Q69 H70 A71 K78 V80 K81 L85 K87 R88 I89 N90 R92 S101 F105 V109 N112 W125 K129 R130 R142	T1 N2 K4 G5 K6 R7 R8 R11 Y12 M13 S15 F18 H21 D40 K42 G45 T46 Q48 K49 G50 H53 H57 K59 T60 T67 Q68 H69 A70 K77 V79 K80 L84 K86 R87 I88 N89 R91 S100 F104 V108 N111 W124 K128 R129 R141
BS02	rna	72	R20 P26 L27 A28	R19 P25 L26 A27

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6zvk, PDBe:6zvk, PDBj:6zvk
PDBsum	6zvk
PubMed	33296660
UniProt	G1SHQ2\|RL21_RABIT Large ribosomal subunit protein eL21 (Gene Name=RPL21)

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