Structure of PDB 5mdx Chain 7

Receptor sequence

>5mdx7 (length=219) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]

SPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRE
LEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYL
GNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFD
PLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH
LADPVNNNAWAFATNFVPG

3D structure

PDB

5mdx Subunit and chlorophyll organization of the plant photosystem II supercomplex.

Chain

Resolution

5.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CLA	7	L159 W162	L112 W115
BS02	CHL	7	K57 Y58 P61 W80	K10 Y11 P14 W33
BS03	CLA	7	G76 D77 Y78 W80 D81 F92 L98 E99 H102 R220 M223	G29 D30 Y31 W33 D34 F45 L51 E52 H55 R173 M176
BS04	CLA	7	L108 G112 P116 A134	L61 G65 P69 A87
BS05	CHL	7	S151 L152 V153 H154 S157 I161	S104 L105 V106 H107 S110 I114
BS06	CHL	7	R104 W105 Y175 R176 L183 G184 L189 P192 F196	R57 W58 Y128 R129 L136 G137 L142 P145 F149
BS07	CHL	7	E97 W105 M169 G170 E173	E50 W58 M122 G123 E126
BS08	CLA	7	R104 M107 Y191 P192 G193 F196 F208 E215 N218	R57 M60 Y144 P145 G146 F149 F161 E168 N171
BS09	CLA	7	W50 K217	W3 K170
BS10	CLA	7	K214 N218 L221	K167 N171 L174
BS11	CLA	7	G228 Q232 T236 N243 H247 N255 A256 F259	G181 Q185 T189 N196 H200 N208 A209 F212
BS12	CLA	7	H247 P251	H200 P204

Gene Ontology

	Biological Process
GO:0009765	photosynthesis, light harvesting

	Cellular Component
GO:0016020	membrane

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5mdx, PDBe:5mdx, PDBj:5mdx
PDBsum	5mdx
PubMed	28604725
UniProt	P04778\|CB1C_ARATH Chlorophyll a-b binding protein 1, chloroplastic (Gene Name=LHCB1.3)

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