Structure of PDB 3j6y Chain 60

Receptor sequence

>3j6y60 (length=172) Species: 580240 (Saccharomyces cerevisiae W303) [Search protein sequence]

MAHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHK
VKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRV
AAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKF
PLPHRVQKSTKTFSYKRPSTFY

3D structure

PDB

3j6y Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.

Chain

Resolution

6.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	60	M1 A2 N65 E66 A67 H68 P69 S83 R84 S85 M90 K92 Q108 A111 A112 R113 R115 R117 T132 R137 K146 P153 H154 R155 K161 Y165 S169 T170 F171	M1 A2 N65 E66 A67 H68 P69 S83 R84 S85 M90 K92 Q108 A111 A112 R113 R115 R117 T132 R137 K146 P153 H154 R155 K161 Y165 S169 T170 F171
BS02	rna	60	Q46 H49 K50 K52 R84 R119	Q46 H49 K50 K52 R84 R119

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:3j6y, PDBe:3j6y, PDBj:3j6y
PDBsum	3j6y
PubMed	24927574
UniProt	P0CX23\|RL20A_YEAST Large ribosomal subunit protein eL20A (Gene Name=RPL20A)

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