Structure of PDB 8cmo Chain 6

Receptor sequence
>8cmo6 (length=226) Species: 75800 (Coelastrella) [Search protein sequence]
RPLWRPGSAPPAHLNGELPGDFGFDPLGLGANPESLKWFAESERVHARWA
MLAVAGILVQEVVKPDVFWYDAPTKIDLPFNIVGLLAFEFFAMHFVELKR
WQDFRNPGSVDADPLFPSNKLAPHEVGYPGFAPFVPGPMEELKVKEIKNG
RLAMLAFIGFTMAAQVTGKGPLAALSEHLADPMGTTIFSKAVVVPGQVVQ
PECKIPQFTDFQGTKIFTPCLFQGLW
3D structure
PDB8cmo Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.
Chain6
Resolution2.81 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA 6 A115 F116 F119 A87 F88 F91
BS02 CLA 6 W32 F250 W4 F222
BS03 CLA 6 H206 P210 T214 F216 H178 P182 T186 F188
BS04 CLA 6 Q235 F236 F245 P247 C248 F250 Q251 G252 Q207 F208 F217 P219 C220 F222 Q223 G224
BS05 CLA 6 F119 H122 F123 L126 K127 P142 F91 H94 F95 L98 K99 P114
BS06 CLA 6 R76 M79 L80 Y156 P157 G158 F159 A160 F162 P164 M167 L170 E174 N177 R48 M51 L52 Y128 P129 G130 F131 A132 F134 P136 M139 L142 E146 N149
BS07 CLA 6 P164 K173 N177 L180 P136 K145 N149 L152
BS08 CLA 6 I186 G187 M190 H206 T213 T214 I215 K218 I158 G159 M162 H178 T185 T186 I187 K190
BS09 CLA 6 L42 G48 D49 F50 F52 D53 L57 G58 L64 F67 A68 E71 H74 R179 M182 L183 L14 G20 D21 F22 F24 D25 L29 G30 L36 F39 A40 E43 H46 R151 M154 L155
BS10 CLA 6 W66 F67 S70 H74 I186 W38 F39 S42 H46 I158
BS11 CLA 6 W77 G84 Q88 W49 G56 Q60
BS12 CLA 6 K173 K176 N177 K145 K148 N149
BS13 CLA 6 W32 P34 F50 F52 W4 P6 F22 F24
BS14 CHL 6 Y98 D99 P101 E117 T237 F239 F245 T246 P247 Y70 D71 P73 E89 T209 F211 F217 T218 P219
BS15 CHL 6 R76 W77 V124 K127 R128 V138 G155 P157 F159 R48 W49 V96 K99 R100 V110 G127 P129 F131
BS16 CLA 6 W66 S70 V73 H74 W77 F118 M121 H122 E125 R128 W38 S42 V45 H46 W49 F90 M93 H94 E97 R100
BS17 CHL 6 P101 L106 F108 L113 F116 E117 P73 L78 F80 L85 F88 E89
BS18 CLA 6 I186 M190 I215 L249 F250 W254 I158 M162 I187 L221 F222 W226
BS19 CHL 6 F123 K127 V138 A140 D141 P142 L143 F144 N147 K148 L149 F95 K99 V110 A112 D113 P114 L115 F116 N119 K120 L121
BS20 CLA 6 H122 W129 H94 W101
BS21 CLA 6 F216 A219 V220 V221 V222 P223 F188 A191 V192 V193 V194 P195
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Wed Dec 4 21:05:29 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8cmo', asym_id = '6', title = 'Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8cmo', asym_id='6', title='Cryo-EM structure of the Photosystem I - LHCI supercomplex from Coelastrella sp.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8cmo', asym_id = '6'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8cmo', asym_id='6')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>