Structure of PDB 7pmk Chain 6

Receptor sequence
>7pmk6 (length=637) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
SFKSRALNHVKKVDDVTGEKVREAFEQFLEDFSVQSTDTGEVEKVYRAQI
EFMKIYDLNTIYIDYQHLSMRENGALAMAISEQYYRFLPFLQKGLRRVVR
KYAPELLNTSSPEQTERVFQISFFNLPTVHRIRDIRSEKIGSLLSISGTV
TRTSEVRPELYKASFTCDMCRAIVDNVEQSFKYTEPTFCPNPSCENRAFW
TLNVTRSRFLDWQKVRIQENANEIPTGSMPRTLDVILRGDSVERAKPGDR
CKFTGVEIVVPDVTQLGLPGVKPSSNSGVTGLRSLGVRDLTYKISFLACH
VISIGNERDQEVFLNSLSSDEINELKEMVKDEHIYDKLVRSIAPAVFGHE
AVKKGILLQMLGGVHKSTVEGIKLRGDINICVVGDPSTSKSQFLKYVVGF
APRSVYTSGKASSAAGLTAAVVRDDYTIEAGALMLADNGICCIDEFDKMD
ISDQVAIHEAMEQQTISIAKAGIHATLNARTSILAAANPVGGRYNRKLSL
RGNLNMTAPIMSRFDLFFVILDDCNEKIDTELASHIVDLHMKPPFSAEQL
RRYIKYARTFKPILTKEARSYLVEKYKELRKDDAQGFSRSSYRITVRQLE
SMIRLSEAIARANCVDEITPSFIAEAYDLLRQSIIRV
3D structure
PDB7pmk A conserved mechanism for regulating replisome disassembly in eukaryotes.
Chain6
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna 6 K416 S604 V612 K665 A666 K272 S413 V421 K470 A471
BS02 dna 6 V445 R614 V287 R423
BS03 ANP 6 E657 R708 V797 R798 E801 E462 R513 V596 R597 E600
BS04 ZN 6 C311 C338 C167 C194
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0003688 DNA replication origin binding
GO:0003697 single-stranded DNA binding
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0009378 four-way junction helicase activity
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0017116 single-stranded DNA helicase activity
GO:0043138 3'-5' DNA helicase activity
GO:1990518 single-stranded 3'-5' DNA helicase activity
Biological Process
GO:0000727 double-strand break repair via break-induced replication
GO:0006260 DNA replication
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006268 DNA unwinding involved in DNA replication
GO:0006270 DNA replication initiation
GO:0006271 DNA strand elongation involved in DNA replication
GO:0006279 premeiotic DNA replication
GO:0032508 DNA duplex unwinding
GO:1902969 mitotic DNA replication
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005656 nuclear pre-replicative complex
GO:0005737 cytoplasm
GO:0031261 DNA replication preinitiation complex
GO:0031298 replication fork protection complex
GO:0042555 MCM complex
GO:0043596 nuclear replication fork
GO:0071162 CMG complex
GO:0097373 MCM core complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7pmk, PDBe:7pmk, PDBj:7pmk
PDBsum7pmk
PubMed34700328
UniProtP53091|MCM6_YEAST DNA replication licensing factor MCM6 (Gene Name=MCM6)

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