Structure of PDB 6esb Chain 6

Receptor sequence
>6esb6 (length=345) Species: 1891762 (Betapolyomavirus hominis) [Search protein sequence]
KKPKEPVQVPKLLIKGGVEVLEVKTGVDAITEVECFLNPEMGDPDENLRG
FSLKLSAENDFSSDSPERKMLPCYSTARIPLPNLNEDLTCGNLLMWEAVT
VQTEVIGITSMLNLHAGSQKVHEHGGGKPIQGSNFHFFAVGGDPLEMQGV
LMNYRTKYPDGTITPKNPTAQSQVMNTDHKAYLDKNNAYPVECWVPDPSR
NENTRYFGTFTGGENVPPVLHVTNTATTVLLDEQGVGPLCKADSLYVSAA
DICGLFTNSSGTQQWRGLARYFKIRLRKRSVKNPYPISFLLSDLINRRTQ
RVDGQPMYGMESQVEEVRVFDGTERLPGDPDMIRYIDKQGQLQTK
3D structure
PDB6esb The Structure of an Infectious Human Polyomavirus and Its Interactions with Cellular Receptors.
Chain6
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide 6 Q116 N238 T239 A240 T241 L245 Q102 N224 T225 A226 T227 L231
BS02 SIA 6 L62 L67 K68 N272 T276 Q278 L48 L53 K54 N258 T262 Q264
BS03 CA 6 S213 E216 S199 E202
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0019062 virion attachment to host cell
GO:0046718 symbiont entry into host cell
GO:0075513 caveolin-mediated endocytosis of virus by host cell
Cellular Component
GO:0019028 viral capsid
GO:0039620 T=7 icosahedral viral capsid
GO:0042025 host cell nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6esb, PDBe:6esb, PDBj:6esb
PDBsum6esb
PubMed29706532
UniProtP03088|VP1_POVBK Major capsid protein VP1

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