Structure of PDB 6lqv Chain 5C

Receptor sequence
>6lqv5C (length=409) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
SSAAATDYLLPESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLS
LKEFGPYHIKYAKNGTHLLITGRKGHVASMDWRKGQLRAELFLNETCHSA
TYLQNEQYFAVAQKKYTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVT
AGETGWLKYHDVSTGQLVSELRTKAGPTMAMAQNPWNAVMHLGHSNGTVS
LWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATTGADRSMKIWDIRNFK
QLHSVESLPTPGTNVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGS
MGGNPHRNTPYMSHLFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAG
EANYDALELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSVDKRSS
TIRLNAKDL
3D structure
PDB6lqv Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Chain5C
Resolution4.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 5C T221 L414 K423 Q424 R431 K436 T164 L357 K366 Q367 R374 K379
BS02 rna 5C K82 F84 K85 Q164 H179 P316 H337 G356 S357 G359 G360 A374 K422 R425 K25 F27 K28 Q107 H122 P259 H280 G299 S300 G302 G303 A317 K365 R368
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0005515 protein binding
Biological Process
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0030688 preribosome, small subunit precursor
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqv, PDBe:6lqv, PDBj:6lqv
PDBsum6lqv
PubMed32943522
UniProtP40055|UTP7_YEAST U3 small nucleolar RNA-associated protein 7 (Gene Name=UTP7)

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