Structure of PDB 5el4 Chain 59

Receptor sequence

>5el459 (length=69) Species: 300852 (Thermus thermophilus HB8)

RLPIPVPVRVERPSDERRHKSLHGLTRTLIANAVKGVSGQVAANIRAIRK
PSAYHEKGIYYAGEPVRLK

3D structure

• PDB: 5el4 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
• Chain: 59
• Resolution: 3.15 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	59	R6 E58 R59 R60 K62 S63 G66 L67 T70 Q143 A145 A146 K153 Y157 H158 K160	R1 E16 R17 R18 K20 S21 G24 L25 T28 Q40 A42 A43 K50 Y54 H55 K57

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 18:07:12 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5el4', asym_id = '59', title = 'Novel base-pairing interactions at the tRNA wobb...crucial for accurate reading of the genetic code.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5el4', asym_id='59', title='Novel base-pairing interactions at the tRNA wobb...crucial for accurate reading of the genetic code.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412,0019843', uniprot = '', pdbid = '5el4', asym_id = '59'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0019843', uniprot='', pdbid='5el4', asym_id='59')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>