Structure of PDB 8bd3 Chain 5

Receptor sequence
>8bd35 (length=221) Species: 2649997 (Chlorella ohadii) [Search protein sequence]
VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYREL
EVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYL
GNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDP
LGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHL
AAPDATNFWVDYAPKSAGIGY
3D structure
PDB8bd3 Structure of Chlorella ohadii Photosystem II Reveals Protective Mechanisms against Environmental Stress.
Chain5
Resolution2.73 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CHL 5 F245 W246 A250 S253 F208 W209 A213 S216
BS02 CHL 5 W69 T71 W32 T34
BS03 CHL 5 P46 Q47 F48 L49 G50 P51 Y67 W69 P9 Q10 F11 L12 G13 P14 Y30 W32
BS04 CLA 5 L59 G65 D66 Y67 G68 W69 D70 L74 S75 F81 Y84 R85 E88 H91 R209 M212 L22 G28 D29 Y30 G31 W32 D33 L37 S38 F44 Y47 R48 E51 H54 R172 M175
BS05 CLA 5 Y84 L87 H91 Y47 L50 H54
BS06 CLA 5 L97 G98 G101 T104 F116 Q127 L134 Y136 L137 I143 L60 G61 G64 T67 F79 Q90 L97 Y99 L100 I106
BS07 CHL 5 S141 L142 I143 H144 A145 Q146 S147 A150 I151 T154 S104 L105 I106 H107 A108 Q109 S110 A113 I114 T117
BS08 CHL 5 W94 G125 L134 I151 T154 Q155 L158 W57 G88 L97 I114 T117 Q118 L121
BS09 CHL 5 F122 K123 G125 A126 F129 I148 L152 Q155 F85 K86 G88 A89 F92 I111 L115 Q118
BS10 CHL 5 R93 W94 I162 Y165 R166 G169 G170 P171 G173 L176 P181 F185 R56 W57 I125 Y128 R129 G132 G133 P134 G136 L139 P144 F148
BS11 CHL 5 L87 I90 H91 W94 Q155 M159 G160 E163 R166 L50 I53 H54 W57 Q118 M122 G123 E126 R129
BS12 CLA 5 R93 M96 L97 Y180 P181 G182 F185 D186 L190 A191 F197 L200 E204 N207 R56 M59 L60 Y143 P144 G145 F148 D149 L153 A154 F160 L163 E167 N170
BS13 CLA 5 W40 V202 K203 K206 N207 W3 V165 K166 K169 N170
BS14 CLA 5 L200 K203 N207 L210 L163 K166 N170 L173
BS15 CLA 5 V213 G217 V220 Q221 N232 L233 H236 N244 F245 D248 V176 G180 V183 Q184 N195 L196 H199 N207 F208 D211
BS16 CLA 5 L233 H236 L237 P240 D241 N244 W246 L196 H199 L200 P203 D204 N207 W209
BS17 CLA 5 S253 G255 I256 G257 Y258 S216 G218 I219 G220 Y221
BS18 CLA 5 F122 G222 L223 R226 F85 G185 L186 R189
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 15 21:25:36 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8bd3', asym_id = '5', title = 'Structure of Chlorella ohadii Photosystem II Rev...otective Mechanisms against Environmental Stress.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8bd3', asym_id='5', title='Structure of Chlorella ohadii Photosystem II Rev...otective Mechanisms against Environmental Stress.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8bd3', asym_id = '5'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8bd3', asym_id='5')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>