Structure of PDB 7y7b Chain 5

Receptor sequence
>7y7b5 (length=188) Species: 173977 (Chroomonas placoidea) [Search protein sequence]
LWEDGKVQGKGLKAIPFSDPPESLPSDMVGYVGFDPLGFSTLFDIKFLRE
AELKHGRAAMLAAAGAIAQDIFTFPGVTSVIGDAKMTGAHDAFLKAAADG
NPKANAMSQLFVWIGFFELVSMPALFETLNGGERAPGDFYFDPLGLGKGS
GRARMELAEIKNGRLAMIGIGGMVHHYLLTGKGPIGTI
3D structure
PDB7y7b Structural basis and evolution of the photosystem I-light-harvesting supercomplex of cryptophyte algae.
Chain5
Resolution2.66 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA 5 A53 I54 P55 V71 F73 A14 I15 P16 V32 F34
BS02 CLA 5 L63 G69 Y70 V71 F73 D74 F78 L87 R88 A90 E91 R203 M206 L24 G30 Y31 V32 F34 D35 F39 L48 R49 A51 E52 R164 M167
BS03 CLA 5 F86 L87 A90 H94 F47 L48 A51 H55
BS04 CLA 5 L100 A101 G104 A107 Q108 F111 T112 F113 F132 M146 L61 A62 G65 A68 Q69 F72 T73 F74 F93 M107
BS05 CLA 5 N144 A145 Q148 L149 W152 N105 A106 Q109 L110 W113
BS06 CLA 5 H129 L133 L149 F150 H90 L94 L110 F111
BS07 CLA 5 F86 E89 A90 K93 H94 F150 G154 E157 M161 F47 E50 A51 K54 H55 F111 G115 E118 M122
BS08 CLA 5 R96 M99 L100 D177 F178 F180 D181 L185 G186 R191 M194 E195 E198 R57 M60 L61 D138 F139 F141 D142 L146 G147 R152 M155 E156 E159
BS09 CLA 5 R193 L196 A197 K200 N201 L204 R154 L157 A158 K161 N162 L165
BS10 KC2 5 R193 M194 N201 L204 R154 M155 N162 L165
BS11 CLA 5 G211 H214 H215 L218 G172 H175 H176 L179
BS12 CLA 5 H214 L217 L218 H175 L178 L179
BS13 CLA 5 F113 P114 V116 F74 P75 V77
BS14 II0 5 M99 D181 P182 L183 L204 G208 M212 H215 P223 M60 D142 P143 L144 L165 G169 M173 H176 P184
BS15 II0 5 F73 L76 F78 A101 Q108 M125 M206 F34 L37 F39 A62 Q69 M86 M167
BS16 II0 5 R203 L204 I207 R164 L165 I168
BS17 II0 5 R96 A97 L100 K142 L149 R57 A58 L61 K103 L110
BS18 IHT 5 F73 T126 D130 I207 G210 V213 H214 F34 T87 D91 I168 G171 V174 H175
BS19 II0 5 N144 S147 Q148 W152 N105 S108 Q109 W113
BS20 CLA 5 Y179 F180 Y140 F141
BS21 CLA 5 G154 F155 G115 F116
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Thu Feb 27 19:36:03 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7y7b', asym_id = '5', title = 'Structural basis and evolution of the photosyste...ght-harvesting supercomplex of cryptophyte algae.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7y7b', asym_id='5', title='Structural basis and evolution of the photosyste...ght-harvesting supercomplex of cryptophyte algae.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '7y7b', asym_id = '5'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='7y7b', asym_id='5')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>