Structure of PDB 5ibb Chain 4E

Receptor sequence
>5ibb4E (length=149) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLA
VQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGA
VPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRK
3D structure
PDB5ibb The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Chain4E
Resolution2.96 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 4E R14 T16 A17 R18 M19 Q20 A21 R24 R25 K47 K57 A86 T98 I101 A102 L119 T120 K121 E122 S125 R126 N127 N130 R10 T12 A13 R14 M15 Q16 A17 R20 R21 K43 K53 A82 T94 I97 A98 L115 T116 K117 E118 S121 R122 N123 N126
BS02 rna 4E R15 F26 F28 R11 F22 F24
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:5ibb, PDBe:5ibb, PDBj:5ibb
PDBsum5ibb
PubMed27174928
UniProtQ5SHQ5|RS5_THET8 Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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