Structure of PDB 8h6l Chain 4B

Receptor sequence
>8h6l4B (length=256) Species: 9606 (Homo sapiens) [Search protein sequence]
PEIEWWDSYIIFGITNLVEHPAQLNPPVTLGVYLTKKEQKKLRRQTRREA
QKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAK
RQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAK
KFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDT
NKCVLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSES
VLESTD
3D structure
PDB8h6l Structural Insights into Human Exon-defined Spliceosome Prior to Activation
Chain4B
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 4B Q457 K475 R477 N480 N515 R518 K519 L520 K528 F558 K559 Q566 K589 R596 R601 Q51 K69 R71 N74 N109 R112 K113 L114 K122 F152 K153 Q160 K183 R190 R195
BS02 rna 4B K442 K447 R449 R450 Q461 R465 R507 H511 K526 Q566 K36 K41 R43 R44 Q55 R59 R101 H105 K120 Q160
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0000244 spliceosomal tri-snRNP complex assembly
GO:0000375 RNA splicing, via transesterification reactions
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005829 cytosol
GO:0015030 Cajal body
GO:0016607 nuclear speck
GO:0032991 protein-containing complex
GO:0046540 U4/U6 x U5 tri-snRNP complex
GO:0071005 U2-type precatalytic spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8h6l, PDBe:8h6l, PDBj:8h6l
PDBsum8h6l
PubMed38658629
UniProtO43395|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 (Gene Name=PRPF3)

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