Structure of PDB 7vd5 Chain 40
Receptor sequence
>7vd540 (length=155) [
Search protein sequence
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EPLGLYDPLGWLDPEKDPASKFATFHANFERRRAVERKHGRIAMVAVVGM
LFHNADIEFPGYLSGELGIRFSDVPNGMNGLFSIPLAGLTQIVFAIGVME
LAIWPASNYSGDYGTGYGRPFVPNVLEGDELKYKLDMEINQGRAAMMGIM
GALVG
3D structure
PDB
7vd5
Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
Chain
40
Resolution
2.5 Å
3D
structure
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Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
CLA
40
Y145 G146 P148 N152
Y117 G118 P120 N124
BS02
KC1
40
F122 L129
F94 L101
BS03
A86
40
T118 V121 F122 G125 V126 A130
T90 V93 F94 G97 V98 A102
BS04
CLA
40
L33 P36 W39 L40 F57 R60 R61 E64 H67 R171 M174
L5 P8 W11 L12 F29 R32 R33 E36 H39 R143 M146
BS05
KC1
40
H54 R59 R60 H67
H26 R31 R32 H39
BS06
CLA
40
V73 A74 G77 F80 H81 E86 F87 V102 G108 L109
V45 A46 G49 F52 H53 E58 F59 V74 G80 L81
BS07
KC1
40
L91 S92 G93 E94 P113 G116 Q119 I120
L63 S64 G65 E66 P85 G88 Q91 I92
BS08
KC1
40
V63 K66 H67 V121 I124 E128 L129 A134 Y137
V35 K38 H39 V93 I96 E100 L101 A106 Y109
BS09
CLA
40
R69 M72 G139 D140 Y141 T143 G144 Y145 V153 L159 K162 L163 E166 Q169
R41 M44 G111 D112 Y113 T115 G116 Y117 V125 L131 K134 L135 E138 Q141
BS10
CLA
40
K162 M165 Q169
K134 M137 Q141
BS11
CLA
40
F50 A51 T52 F53 H54
F22 A23 T24 F25 H26
BS12
A86
40
M72 V75 T143 Y145 Q169 A172 A173 G176 A180
M44 V47 T115 Y117 Q141 A144 A145 G148 A152
BS13
DD6
40
H67 I70 A71 A74 G105 M106 G108 L109 M174 M175 I177
H39 I42 A43 A46 G77 M78 G80 L81 M146 M147 I149
BS14
DD6
40
K66 R69 I70 Y90 I120 I124
K38 R41 I42 Y62 I92 I96
External links
PDB
RCSB:7vd5
,
PDBe:7vd5
,
PDBj:7vd5
PDBsum
7vd5
PubMed
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