Structure of PDB 7cpj Chain 4

Receptor sequence

>7cpj4 (length=38) Species: 562 (Escherichia coli)

MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG

3D structure

• PDB: 7cpj The landscape of translational stall sites in bacteria revealed by monosome and disome profiling.
• Chain: 4
• Resolution: 3.3 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	4	M1 K2 V3 R4 A5 S6 V7 L10 I16 K18 R19 I23 R24 K32 K34 Q37 G38	M1 K2 V3 R4 A5 S6 V7 L10 I16 K18 R19 I23 R24 K32 K34 Q37 G38

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 08:49:03 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7cpj', asym_id = '4', title = 'The landscape of translational stall sites in bacteria revealed by monosome and disome profiling.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7cpj', asym_id='4', title='The landscape of translational stall sites in bacteria revealed by monosome and disome profiling.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7cpj', asym_id = '4'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7cpj', asym_id='4')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>