Structure of PDB 6lqs Chain 3D

Receptor sequence
>6lqs3D (length=378) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
PIEYLLFEEPTGYAVFKVKLQQDDIGSRLKEVQEQINDFGAFTKLIELVS
FAPFKGAAEALENANDISEGLVSESLKAILDLNLPKASSKKKNITLAISD
KNLGPSIKEEFPYVDCISNELAQDLIRGVRLHGEKLFKGLQSGDLERAQL
GLGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWH
FPELAKLVPDNYTFAKLVLFIKDKASLNDDSLHDLAAGIAQRVIDNARIS
MGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIG
EVIGARLISHAGSLTNLSKQAASTVQILGAEKKNKGRISRYLANKCSMAS
RIDNYSEEPSNVFGSVLKKQVEQRLEFY
3D structure
PDB6lqs Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Chain3D
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 3D K32 S331 G373 R377 N381 M385 K30 S323 G336 R340 N344 M348
BS02 rna 3D G42 T45 K46 K137 G40 T43 K44 K135
Gene Ontology
Molecular Function
GO:0003729 mRNA binding
GO:0005515 protein binding
GO:0030515 snoRNA binding
Biological Process
GO:0000154 rRNA modification
GO:0000452 snoRNA guided rRNA 2'-O-methylation
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006364 rRNA processing
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqs, PDBe:6lqs, PDBj:6lqs
PDBsum6lqs
PubMed32943522
UniProtQ12460|NOP56_YEAST Nucleolar protein 56 (Gene Name=NOP56)

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