Structure of PDB 7vd5 Chain 38

Receptor sequence

>7vd538 (length=168)

SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIV
HNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELA
WMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVA
EVLTGQTMYEQYASGHIS

3D structure

• PDB: 7vd5 Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
• Chain: 38
• Resolution: 2.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	A86	38	Y192 A193	Y162 A163
BS02	A86	38	F146 G147	F116 G117
BS03	A86	38	K66 V70 Y90 I120 F124 E128	K36 V40 Y60 I90 F94 E98
BS04	CLA	38	L126 A130 W131 M132	L96 A100 W101 M102
BS05	CLA	38	V43 D45 W49 F57 R60 R61 E64 H67 R168 M171 M172	V13 D15 W19 F27 R30 R31 E34 H37 R138 M141 M142
BS06	CLA	38	R59 R60 H67 M175	R29 R30 H37 M145
BS07	CLA	38	A73 G77 V80 H81 I85 V86 F87 F99 I102 G108	A43 G47 V50 H51 I55 V56 F57 F69 I72 G78
BS08	KC1	38	L91 S92 P113 A115 G116 Q119 I120 F123	L61 S62 P83 A85 G86 Q89 I90 F93
BS09	CLA	38	I109 R110 M178	I79 R80 M148
BS10	KC1	38	V63 H67 L121 F124 A125 E128 L129 A134 S135 Y137	V33 H37 L91 F94 A95 E98 L99 A104 S105 Y107
BS11	CLA	38	R69 M72 G139 D140 Y141 G142 V143 G144 Y145 G147 T148 D149 K159 L160 V162 E163 N166	R39 M42 G109 D110 Y111 G112 V113 G114 Y115 G117 T118 D119 K129 L130 V132 E133 N136
BS12	CLA	38	E39 P40 N161 V162 N165 N166	E9 P10 N131 V132 N135 N136
BS13	KC1	38	Y145 R158 K159 V162 N166	Y115 R128 K129 V132 N136
BS14	CLA	38	M172 G176 V179 Q191 I197	M142 G146 V149 Q161 I167
BS15	A86	38	M72 V75 V143 G144 Y145 F146 A169 A170 G173 N177 Y192	M42 V45 V113 G114 Y115 F116 A139 A140 G143 N147 Y162
BS16	A86	38	Y44 P46 H67 V70 A74 V106 I109 M171 M172 I174	Y14 P16 H37 V40 A44 V76 I79 M141 M142 I144
BS17	A86	38	V182 L183	V152 L153
BS18	A86	38	I79 N83 Y145 Y192	I49 N53 Y115 Y162

Gene Ontology

Biological Process

• GO:0009765 photosynthesis, light harvesting

Cellular Component

• GO:0016020 membrane

External links

• PDB: RCSB:7vd5, PDBe:7vd5, PDBj:7vd5
• PDBsum: 7vd5
• UniProt: A0A679BXP6