Structure of PDB 8bd3 Chain 3

Receptor sequence
>8bd33 (length=221) Species: 2649997 (Chlorella ohadii) [Search protein sequence]
VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYREL
EVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYL
GNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDP
LGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHL
AAPDATNFWVDYAPKSAGIGY
3D structure
PDB8bd3 Structure of Chlorella ohadii Photosystem II Reveals Protective Mechanisms against Environmental Stress.
Chain3
Resolution2.73 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CHL 3 F122 K123 G125 F129 Q155 F85 K86 G88 F92 Q118
BS02 CLA 3 A72 L74 A35 L37
BS03 CHL 3 W69 T71 W32 T34
BS04 CLA 3 W121 G219 G222 L223 R226 Y258 W84 G182 G185 L186 R189 Y221
BS05 CHL 3 F245 W246 A250 P251 S253 A254 F208 W209 A213 P214 S216 A217
BS06 CHL 3 Q47 F48 L49 G50 Y67 W69 Q10 F11 L12 G13 Y30 W32
BS07 CLA 3 L59 G65 D66 Y67 G68 W69 D70 S75 F81 Y84 R85 E88 R209 M212 V213 L22 G28 D29 Y30 G31 W32 D33 S38 F44 Y47 R48 E51 R172 M175 V176
BS08 CLA 3 L87 H91 L50 H54
BS09 CLA 3 L97 G101 T104 P105 F116 L134 Y136 L137 L60 G64 T67 P68 F79 L97 Y99 L100
BS10 CHL 3 L142 I143 H144 A145 Q146 S147 L105 I106 H107 A108 Q109 S110
BS11 CHL 3 W94 G125 L134 I151 Q155 L158 M159 W57 G88 L97 I114 Q118 L121 M122
BS12 CHL 3 R93 W94 I162 Y165 R166 G169 G170 P171 A172 G173 F185 P187 R56 W57 I125 Y128 R129 G132 G133 P134 A135 G136 F148 P150
BS13 CHL 3 E86 L87 I90 H91 W94 Q155 G160 E163 R166 E49 L50 I53 H54 W57 Q118 G123 E126 R129
BS14 CLA 3 R93 M96 L97 Y180 P181 G182 F185 D186 L190 A191 F197 L200 E204 R56 M59 L60 Y143 P144 G145 F148 D149 L153 A154 F160 L163 E167
BS15 CLA 3 W40 E199 V202 K203 K206 N207 W3 E162 V165 K166 K169 N170
BS16 CLA 3 L100 L200 K203 N207 L210 L63 L163 K166 N170 L173
BS17 CLA 3 V213 L216 G217 V220 Q221 T225 N232 L233 H236 F245 W246 Y249 V176 L179 G180 V183 Q184 T188 N195 L196 H199 F208 W209 Y212
BS18 CLA 3 H236 L237 P240 D241 N244 H199 L200 P203 D204 N207
BS19 CLA 3 S253 G255 I256 Y258 S216 G218 I219 Y221
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Wed May 7 22:44:47 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1471                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1472         else:
=> 1473             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1474     
   1475     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8bd3', asym_id = '3', title = 'Structure of Chlorella ohadii Photosystem II Rev...otective Mechanisms against Environmental Stress.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8bd3', asym_id='3', title='Structure of Chlorella ohadii Photosystem II Rev...otective Mechanisms against Environmental Stress.')
    840 
    841     if go:
=>  842         display_go(go,uniprot,pdbid,asym_id)
    843     return pubmed,uniprot
    844 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8bd3', asym_id = '3'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8bd3', asym_id='3')
    481         '''.replace("$namespace_link",namespace_link
    482           ).replace("$namespace",namespace
=>  483           ).replace("$uniprot",u
    484         ))
    485         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>