Structure of PDB 5oqm Chain 3

Receptor sequence
>5oqm3 (length=138) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
ENKDMCPICKTDRYLSPDVKFLVNPECYHRICESCVDRIFSLGPAQCPYK
GCDKILRKNKFKTQIFDDVEVEKEVDIRKRVFNVFNKTIDDFNGDLVEYN
KYLEEVEDIIYKLDHGIDVAKTEEKLRTYEELNKQLIM
3D structure
PDB5oqm Structures of transcription pre-initiation complex with TFIIH and Mediator.
Chain3
Resolution5.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN 3 C13 C16 C42 C6 C9 C35
BS02 ZN 3 C34 H36 C59 C27 H29 C52
Gene Ontology
Molecular Function
GO:0000993 RNA polymerase II complex binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity
Biological Process
GO:0006281 DNA repair
GO:0006289 nucleotide-excision repair
GO:0006357 regulation of transcription by RNA polymerase II
GO:0006366 transcription by RNA polymerase II
GO:0006367 transcription initiation at RNA polymerase II promoter
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity
Cellular Component
GO:0005634 nucleus
GO:0005675 transcription factor TFIIH holo complex
GO:0070985 transcription factor TFIIK complex

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Cellular Component
External links
PDB RCSB:5oqm, PDBe:5oqm, PDBj:5oqm
PDBsum5oqm
PubMed29088706
UniProtQ03290|TFB3_YEAST RNA polymerase II transcription factor B subunit 3 (Gene Name=TFB3)

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