Structure of PDB 8vty Chain 2l

Receptor sequence

>8vty2l (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRK
VAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGV
YDAAGVKDRKKSRSKYGTKKPK

3D structure

PDB

8vty Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms.

Chain

Resolution

2.6 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	2l	P5 N8 Q9 R12 R15 E16 A30 P31 F32 R33 R34 K46 K47 N49 S50 A51 L52 R53 T61 Y69 G72 E73 R86 G87 V90 K91 X92 R97 V104 R113 K114 K115 S116 R117 S118 K119 T122 K123 K124	P1 N4 Q5 R8 R11 E12 A26 P27 F28 R29 R30 K42 K43 N45 S46 A47 L48 R49 T57 Y65 G68 E69 R82 G83 V86 K87 X88 R93 V100 R109 K110 K111 S112 R113 S114 K115 T118 K119 K120
BS02	MG	2l	P48 N49	P44 N45

External links

PDB	RCSB:8vty, PDBe:8vty, PDBj:8vty
PDBsum	8vty
PubMed	39039256
UniProt	Q5SHN3\|RS12_THET8 Small ribosomal subunit protein uS12 (Gene Name=rpsL)