Structure of PDB 8ud6 Chain 2e

Receptor sequence
>8ud62e (length=148) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLA
VQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGA
VPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR
3D structure
PDB8ud6 An antibiotic preorganized for ribosomal binding overcomes antimicrobial resistance
Chain2e
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 2e R14 T16 A17 R18 M19 Q20 A21 G22 R24 R25 K47 P49 K57 G85 A86 A94 A95 T98 I101 A102 L119 T120 K121 E122 S125 R126 N127 R10 T12 A13 R14 M15 Q16 A17 G18 R20 R21 K43 P45 K53 G81 A82 A90 A91 T94 I97 A98 L115 T116 K117 E118 S121 R122 N123
BS02 MG 2e E68 D147 E64 D143
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:8ud6, PDBe:8ud6, PDBj:8ud6
PDBsum8ud6
PubMed38359125
UniProtQ5SHQ5|RS5_THET8 Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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