Structure of PDB 6ip5 Chain 2d

Receptor sequence

>6ip52d (length=86) Species: 9606 (Homo sapiens) [Search protein sequence]

TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSA
KAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPK

3D structure

PDB

6ip5 HCV IRES Captures an Actively Translating 80S Ribosome.

Chain

Resolution

3.9 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	2d	T2 K3 T5 S6 G9 K10 R11 R12 N13 K14 T15 H16 K25 Q30 K36 R43 K44 R45 K46 Y47 N48 W49 K52 R55 R56 Y71 K85	T1 K2 T4 S5 G8 K9 R10 R11 N12 K13 T14 H15 K24 Q29 K35 R42 K43 R44 K45 Y46 N47 W48 K51 R54 R55 Y70 K84
BS02	rna	2d	R20 Y39 K42 T59 T61 G62 R63 M64 R65 H66 K68 Y71 R72 F74 H76 R79 G81 T82 T83 P84 P86 K87	R19 Y38 K41 T58 T60 G61 R62 M63 R64 H65 K67 Y70 R71 F73 H75 R78 G80 T81 T82 P83 P85 K86

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0046872	metal ion binding
GO:0097371	MDM2/MDM4 family protein binding
GO:1990948	ubiquitin ligase inhibitor activity

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:1901798	positive regulation of signal transduction by p53 class mediator

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:6ip5, PDBe:6ip5, PDBj:6ip5
PDBsum	6ip5
PubMed	31080011
UniProt	P61927\|RL37_HUMAN Large ribosomal subunit protein eL37 (Gene Name=RPL37)