Structure of PDB 7rqd Chain 2Z

Receptor sequence
>7rqd2Z (length=201) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MEYRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQ
ASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYV
PLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSL
HASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAEEAAAEVAEPEVIKKG
K
3D structure
PDB7rqd Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol.
Chain2Z
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 2Z Q118 I146 S149 H151 E169 T170 V175 P176 K199 G200 K201 Q118 I146 S149 H151 E169 T170 V175 P176 K199 G200 K201
BS02 rna 2Z R10 P15 R19 V27 Y29 N30 R31 N34 K36 R72 Q73 R79 E84 H85 D87 F89 R10 P15 R19 V27 Y29 N30 R31 N34 K36 R72 Q73 R79 E84 H85 D87 F89
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7rqd, PDBe:7rqd, PDBj:7rqd
PDBsum7rqd
PubMed35165455
UniProtQ5SHZ1|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

[Back to BioLiP]