Structure of PDB 8rpz Chain 2

Receptor sequence
>8rpz2 (length=46) Species: 562 (Escherichia coli) [Search protein sequence]
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK
3D structure
PDB8rpz Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88.
Chain2
Resolution2.44 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 2 M1 R3 T4 F5 Q6 P7 S8 V9 L10 K11 R12 N13 R14 H16 F18 R19 R21 M22 K25 N26 Q29 V30 R33 R34 R35 K37 G38 R39 A40 R41 M1 R3 T4 F5 Q6 P7 S8 V9 L10 K11 R12 N13 R14 H16 F18 R19 R21 M22 K25 N26 Q29 V30 R33 R34 R35 K37 G38 R39 A40 R41
Gene Ontology
Molecular Function
GO:0005515 protein binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8rpz, PDBe:8rpz, PDBj:8rpz
PDBsum8rpz
PubMed38730238
UniProtP0A7P5|RL34_ECOLI Large ribosomal subunit protein bL34 (Gene Name=rpmH)

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