Structure of PDB 8civ Chain 2

Receptor sequence

>8civ2 (length=97) Species: 4932 (Saccharomyces cerevisiae)

PKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVR
DLSEASVYPEYALPKTYNKLHYCVSCAIHARIVRVRSREDRKNRAPP

3D structure

• PDB: 8civ mRNA reading frame maintenance during eukaryotic ribosome translocation
• Chain: 2
• Resolution: 2.47 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	2	P2 K3 K4 R5 A6 N8 G9 R10 N11 K12 K13 G14 R15 H17 K19 K28 K32 K34 K37 R38 K70 V75 S76 I79 H80 V84 R85 V86 R87 S88 R89 R92 K93 R95 P97	P1 K2 K3 R4 A5 N7 G8 R9 N10 K11 K12 G13 R14 H16 K18 K27 K31 K33 K36 R37 K69 V74 S75 I78 H79 V83 R84 V85 R86 S87 R88 R91 K92 R94 P96
BS02	ZN	2	C23 C26 C74 C77	C22 C25 C73 C76

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Nov 27 12:44:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8civ', asym_id = '2', title = 'mRNA reading frame maintenance during eukaryotic ribosome translocation'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8civ', asym_id='2', title='mRNA reading frame maintenance during eukaryotic ribosome translocation')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '8civ', asym_id = '2'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='8civ', asym_id='2')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>