Structure of PDB 5z58 Chain 2

Receptor sequence
>5z582 (length=183) Species: 9606 (Homo sapiens) [Search protein sequence]
TVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKY
LQGKRGIEKPPFELPDFIKRTGIQEMREQKTMKSKMREKVRPKMGKIDID
YQKLHDAFFKWQLTIHGDLYYEGKEFETRKKPGDLSDELRISLGMPVPPP
WLIAMQRYGPPPSYPNLKIPGLNSPLYGDVFGT
3D structure
PDB5z58 Structure of the human activated spliceosome in three conformational states.
Chain2
Resolution4.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 2 S551 R554 R558 K560 S84 R87 R91 K93
BS02 rna 2 H478 T481 C505 H18 T21 C45
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:1903241 U2-type prespliceosome assembly
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005684 U2-type spliceosomal complex
GO:0005686 U2 snRNP
GO:0005689 U12-type spliceosomal complex
GO:0016607 nuclear speck
GO:0071005 U2-type precatalytic spliceosome
GO:0071011 precatalytic spliceosome
GO:0071013 catalytic step 2 spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5z58, PDBe:5z58, PDBj:5z58
PDBsum5z58
PubMed29360106
UniProtQ13435|SF3B2_HUMAN Splicing factor 3B subunit 2 (Gene Name=SF3B2)

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