Structure of PDB 8vty Chain 1m

Receptor sequence

>8vty1m (length=116) Species: 300852 (Thermus thermophilus HB8)

ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEA
EVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQ
RTRTNARTRKGPRKTV

3D structure

• PDB: 8vty Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms.
• Chain: 1m
• Resolution: 2.6 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	1m	V17 Y21 Y23 G24 I25 G26 A28 R29 R44 N77 Y87 R88 R91 H92 P97 V98 R99 Q101 R102 T103 R104 T105 N106 A107 R108 T109 R110 K111 K115 V117	V16 Y20 Y22 G23 I24 G25 A27 R28 R43 N76 Y86 R87 R90 H91 P96 V97 R98 Q100 R101 T102 R103 T104 N105 A106 R107 T108 R109 K110 K114 V116
BS02	MG	1m	G100 Q101	G99 Q100
BS03	MG	1m	T20 I22 I25	T19 I21 I24

External links

• PDB: RCSB:8vty, PDBe:8vty, PDBj:8vty
• PDBsum: 8vty
• PubMed: 39039256
• UniProt: P80377|RS13_THET8 Small ribosomal subunit protein uS13 (Gene Name=rpsM)