Structure of PDB 8vtv Chain 1l

Receptor sequence

>8vtv1l (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRK
VAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGV
YDAAGVKDRKKSRSKYGTKKPK

3D structure

PDB

8vtv Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms.

Chain

Resolution

2.55 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	1l	P5 T6 N8 Q9 R12 R15 E16 P31 F32 R33 R34 K46 K47 N49 S50 A51 R53 T61 G72 E73 G87 K91 X92 R97 V104 R113 K114 K115 S116 R117 S118 K119 T122 K123 K124	P1 T2 N4 Q5 R8 R11 E12 P27 F28 R29 R30 K42 K43 N45 S46 A47 R49 T57 G68 E69 G83 K87 X88 R93 V100 R109 K110 K111 S112 R113 S114 K115 T118 K119 K120
BS02	rna	1l	K47 P48	K43 P44
BS03	MG	1l	P48 N49	P44 N45

External links

PDB	RCSB:8vtv, PDBe:8vtv, PDBj:8vtv
PDBsum	8vtv
PubMed	39039256
UniProt	Q5SHN3\|RS12_THET8 Small ribosomal subunit protein uS12 (Gene Name=rpsL)