Structure of PDB 8vtv Chain 1S

Receptor sequence

>8vtv1S (length=110) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

RLTAYERRKFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSAS
SLALKLKGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALA
EGAREGGLEF

3D structure

PDB

8vtv Macrolones target bacterial ribosomes and DNA gyrase and can evade resistance mechanisms.

Chain

Resolution

2.55 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	1S	R3 L4 R9 R10 F12 R13 N16 R17 T21 R23 F87 R89 Y94 R106 F112	R1 L2 R7 R8 F10 R11 N14 R15 T19 R21 F85 R87 Y92 R104 F110
BS02	rna	1S	R15 K19 R25 F29 R30 S31 L32 K33 Y36 Q38 G45 V46 T47 S50 L54 K62 T63 K93 H95 G96 R97	R13 K17 R23 F27 R28 S29 L30 K31 Y34 Q36 G43 V44 T45 S48 L52 K60 T61 K91 H93 G94 R95
BS03	MG	1S	R15 V28 D88 G90	R13 V26 D86 G88
BS04	MG	1S	I35 R97	I33 R95

External links

PDB	RCSB:8vtv, PDBe:8vtv, PDBj:8vtv
PDBsum	8vtv
PubMed	39039256
UniProt	Q5SHQ4\|RL18_THET8 Large ribosomal subunit protein uL18 (Gene Name=rplR)