Structure of PDB 9b00 Chain 1P

Receptor sequence

>9b001P (length=149) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRR
FEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLARFEGEVTPELL
VRAGLLKKGYRLKILGEGEAKPLKVVAHAFSKSALEKLKAAGGEPVLLE

3D structure

PDB

9b00 Berberine analog of chloramphenicol exhibits a distinct mode of action and unveils ribosome plasticity.

Chain

Resolution

2.8 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	1P	K2 L3 S4 R7 N9 P10 A12 N13 K14 R15 R16 K17 R18 V19 G20 R21 G22 P23 G24 G28 K29 T30 A31 T32 R33 G34 H35 K36 G37 Q38 K39 S40 R41 S42 G43 L45 K46 P48 R50 F51 E52 G53 G54 R55 S56 M60 R61 P63 K64 R65 G66 M67 G69 Q70 V71 P72 G73 E74 I75 K76 R77 Q81 N84 R90 L105 K107 K108 K113 L115 G116 E117 S131 K132 S133	K2 L3 S4 R7 N9 P10 A12 N13 K14 R15 R16 K17 R18 V19 G20 R21 G22 P23 G24 G28 K29 T30 A31 T32 R33 G34 H35 K36 G37 Q38 K39 S40 R41 S42 G43 L45 K46 P48 R50 F51 E52 G53 G54 R55 S56 M60 R61 P63 K64 R65 G66 M67 G69 Q70 V71 P72 G73 E74 I75 K76 R77 Q81 N84 R90 L105 K107 K108 K113 L115 G116 E117 S131 K132 S133
BS02	MG	1P	R33 K39	R33 K39
BS03	MG	1P	R21 G22 S25	R21 G22 S25
BS04	MG	1P	K36 G37	K36 G37
BS05	MG	1P	G34 H35 K36	G34 H35 K36
BS06	MG	1P	H27 A31 T32	H27 A31 T32

External links

PDB	RCSB:9b00, PDBe:9b00, PDBj:9b00
PDBsum	9b00
PubMed	39019034
UniProt	Q5SHQ7\|RL15_THET8 Large ribosomal subunit protein uL15 (Gene Name=rplO)

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