Structure of PDB 8ud6 Chain 1O

Receptor sequence
>8ud61O (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG
AVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFG
PVARELREKGFMKIVSLAPEVL
3D structure
PDB8ud6 An antibiotic preorganized for ribosomal binding overcomes antimicrobial resistance
Chain1O
Resolution2.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 1O M1 Q3 Q5 T6 Y7 I22 R23 S28 N29 A30 K31 Y32 S42 K44 K67 E68 K70 M1 Q3 Q5 T6 Y7 I22 R23 S28 N29 A30 K31 Y32 S42 K44 K67 E68 K70
BS02 rna 1O N13 P48 R49 T96 R97 R107 N13 P48 R49 T96 R97 R107
BS03 MG 1O R49 G50 K53 R49 G50 K53
BS04 MG 1O D12 I86 G95 D12 I86 G95
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8ud6, PDBe:8ud6, PDBj:8ud6
PDBsum8ud6
PubMed38359125
UniProtQ5SHP8|RL14_THET8 Large ribosomal subunit protein uL14 (Gene Name=rplN)

[Back to BioLiP]