Structure of PDB 7ymm Chain 1B

Receptor sequence
>7ymm1B (length=479) Species: 329726 (Acaryochloris marina MBIC11017) [Search protein sequence]
GLPWYRVHTVVLNDPGRLLSVHLMHTALVSGWAGSMALYELAKYDPSDPV
LNPMWRQGTFVMPVMTRIGVTHSWSGWTVTGEPWVTQPGILGAHLNFFSY
EGVILMHILAAGLFFLAAVWHWINWDLDIYYPDGSSEPASDWPKIFGLHL
LTLGIVCFGFGSLHLTGILGPGMWVSDPYGLTGHVQGVSPDWRPFAFDPY
NPTGLVTHHISAGIALIIGGIFHTVSRPSERLYNALSMGNVETVLSSSVA
FVAAAAFVMVGTMWYGSATTPIELFGPTRYQWDSGYFQTEIQRRVQSGQT
WDQIPEKLVFYDYIGNSPAKGGLFRTGAMNSGDGIARAWEGHPTFTDSEG
RELFVRRMPNFFETFPVVLTDKDGVVRADIPFRRAESRYSFEQKGVSVSF
EGGTLNGQTFTDAPSVKKYARKAQLGEPFEFDRETLGSDGVFRTSTRGWF
AFSHSCYALLFFFGHWWHGARTIFKDVFE
3D structure
PDB7ymm Structure of a large photosystem II supercomplex from Acaryochloris marina.
Chain1B
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CL7 1B W193 F198 W192 F197
BS02 CL7 1B W193 F198 T208 H209 S212 A213 V259 W192 F197 T207 H208 S211 A212 V258
BS03 CL7 1B R68 C158 F161 L206 H209 H210 F252 T270 R67 C157 F160 L205 H208 H209 F251 T269
BS04 CL7 1B W33 F61 R68 A256 A257 M260 F451 H455 Y458 F462 W32 F60 R67 A255 A256 M259 F450 H454 Y457 F461
BS05 CL7 1B V30 A34 V62 H108 F252 V29 A33 V61 H107 F251
BS06 CL7 1B I69 F99 M107 L110 V157 G160 F161 H165 L170 P172 I68 F98 M106 L109 V156 G159 F160 H164 L169 P171
BS07 CL7 1B W33 M37 Y40 G59 F61 F325 T327 G328 A329 W450 S454 Y458 W32 M36 Y39 G58 F60 F324 T326 G327 A328 W449 S453 Y457
BS08 CL7 1B S247 F463 H466 W467 S246 F462 H465 W466
BS09 CL7 1B F147 L151 G220 F223 H224 L237 F146 L150 G219 F222 H223 L236
BS10 CL7 1B P144 F147 H150 M239 V245 S248 P143 F146 H149 M238 V244 S247
BS11 CL7 1B Y6 R7 V8 L246 F462 G465 W468 H469 R472 Y5 R6 V7 L245 F461 G464 W467 H468 R471
BS12 CL7 1B H9 L19 V22 H23 H26 T27 V242 V245 L246 S249 H8 L18 V21 H22 H25 T26 V241 V244 L245 S248
BS13 CL7 1B H26 V30 W33 H25 V29 W32
BS14 CL7 1B V8 H9 V22 V7 H8 V21
BS15 CL7 1B L20 H23 I146 L149 H150 L19 H22 I145 L148 H149
BS16 CL7 1B L20 L24 A118 W121 H122 L128 I130 L19 L23 A117 W120 H121 L127 I129
BS17 8CT 1B M25 V120 W123 M24 V119 W122
BS18 8CT 1B W33 G113 W32 G112
BS19 CL7 1B H95 F98 F99 M107 H94 F97 F98 M106
BS20 8CT 1B S36 Y40 F116 S35 Y39 F115
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:7ymm, PDBe:7ymm, PDBj:7ymm
PDBsum7ymm
PubMed38394197
UniProtB0CFM2

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