Structure of PDB 6bu8 Chain 17

Receptor sequence
>6bu817 (length=116) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF
3D structure
PDB6bu8 Structural dynamics of protein S1 on the 70S ribosome visualized by ensemble cryo-EM.
Chain17
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna 17 R9 R10 T12 R13 R16 K17 F92 R94 Y99 R111 R8 R9 T11 R12 R15 K16 F91 R93 Y98 R110
BS02 rna 17 K3 K4 R15 R25 H29 R30 T31 R33 H34 Y36 Q38 I40 G44 V47 V54 Y64 N67 K68 Q98 H100 R102 K2 K3 R14 R24 H28 R29 T30 R32 H33 Y35 Q37 I39 G43 V46 V53 Y63 N66 K67 Q97 H99 R101
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6bu8, PDBe:6bu8, PDBj:6bu8
PDBsum6bu8
PubMed29247757
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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