Structure of PDB 5uym Chain 15

Receptor sequence

>5uym15 (length=136) Species: 83333 (Escherichia coli K-12)

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

• PDB: 5uym Ensemble cryo-EM elucidates the mechanism of translation fidelity
• Chain: 15
• Resolution: 3.2 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	15	K5 R6 K8 F9 K11 M12 H13 K14 G15 R16 Q22 G23 F28 R40 Q45 A48 R55 W64 R66 F68 D70 T74 K76 A79 R81 M82 G83 K84 G85 K86 A122 K123 P125	K5 R6 K8 F9 K11 M12 H13 K14 G15 R16 Q22 G23 F28 R40 Q45 A48 R55 W64 R66 F68 D70 T74 K76 A79 R81 M82 G83 K84 G85 K86 A122 K123 P125
BS02	rna	15	R18 G19 R38	R18 G19 R38

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5uym, PDBe:5uym, PDBj:5uym
• PDBsum: 5uym
• PubMed: 28538735
• UniProt: P0ADY7|RL16_ECOLI Large ribosomal subunit protein uL16 (Gene Name=rplP)