Structure of PDB 7vd5 Chain 14

Receptor sequence

>7vd514 (length=172) [Search protein sequence]

SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIV
HNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELA
WMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVA
EVLTGQTMYEQYASGHISPFGD

3D structure

PDB

7vd5 Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex

Chain

Resolution

2.5 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CLA	14	A130 W131 M132	A100 W101 M102
BS02	A86	14	F146 G147	F116 G117
BS03	CLA	14	Y44 D45 L47 R60 R61 E64 R168 M171	Y14 D15 L17 R30 R31 E34 R138 M141
BS04	CLA	14	R59 R60 V63 H67	R29 R30 V33 H37
BS05	CLA	14	A73 A74 G77 H81 V86 F87 F99 G108 I112	A43 A44 G47 H51 V56 F57 F69 G78 I82
BS06	KC1	14	L91 S92 P93 S94 P113 A115 G116 Q119 I120 F123	L61 S62 P63 S64 P83 A85 G86 Q89 I90 F93
BS07	CLA	14	D107 I109 R110	D77 I79 R80
BS08	KC1	14	R59 V63 K66 H67 L121 A125 E128 L129 A134 Y137	R29 V33 K36 H37 L91 A95 E98 L99 A104 Y107
BS09	CLA	14	R69 M72 G139 D140 Y141 G142 V143 Y145 D149 K156 K159 L160 E163	R39 M42 G109 D110 Y111 G112 V113 Y115 D119 K126 K129 L130 E133
BS10	CLA	14	E39 P40 N161 V162 N165 N166	E9 P10 N131 V132 N135 N136
BS11	KC1	14	V76 Y145 R158 K159 V162 N166	V46 Y115 R128 K129 V132 N136
BS12	CLA	14	M172 G176 V179 A180 Q191 I197 P199 D202	M142 G146 V149 A150 Q161 I167 P169 D172
BS13	A86	14	M72 V75 V143 G144 F146 N166 A169 A170 G173 N177 Y192	M42 V45 V113 G114 F116 N136 A139 A140 G143 N147 Y162
BS14	A86	14	Y44 P46 V106 I109 M171 I174	Y14 P16 V76 I79 M141 I144
BS15	A86	14	N165 A169 M172	N135 A139 M142
BS16	A86	14	K66 V70 Y90 L91 F124 E128	K36 V40 Y60 L61 F94 E98
BS17	A86	14	I79 N83 Y145 M188 Y192	I49 N53 Y115 M158 Y162

Gene Ontology

	Molecular Function
GO:0016168	chlorophyll binding

	Biological Process
GO:0009416	response to light stimulus
GO:0009765	photosynthesis, light harvesting
GO:0009768	photosynthesis, light harvesting in photosystem I
GO:0015979	photosynthesis

	Cellular Component
GO:0009536	plastid
GO:0016020	membrane
GO:0030076	light-harvesting complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7vd5, PDBe:7vd5, PDBj:7vd5
PDBsum	7vd5
PubMed
UniProt	A0A679BXP6

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